Genome characterization of a Turkish bovine rotavirus field isolate by shotgun metagenomics
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Tarih
2023
Yazarlar
Dergi Başlığı
Dergi ISSN
Cilt Başlığı
Yayıncı
Springer Wien
Erişim Hakkı
info:eu-repo/semantics/openAccess
Özet
A bovine rotavirus (BRV) isolate from Kirsehir was isolated from feces of a neonatal calf with diarrhea, identified, and sequenced by shotgun sequencing. Its genotype constellation is G10-P[5]-I2-R2-C2-M2-A3-N2-T6-E2-H3. The structural genes and the non-structural genes NSP1, NSP3, and NSP4 of the Kirsehir isolate were similar in sequence to those of BRVs identified in Turkey. However, VP2, NSP2, NSP4, and NSP5/6 showed similarity to those of rotaviruses from different animal hosts. These findings not only expand our current understanding of the diversity of rotaviruses but also contribute to our understanding of the evolution of rotaviruses at both the national and global levels and reinforce the significance of conducting further research on rotaviruses in Turkey.
Açıklama
Anahtar Kelimeler
Bovine rotavirus; Neonatal calf diarrhea; Virus isolation; Whole genome sequencing; Shotgun sequencing; Evolution
Kaynak
Archives of Virology
WoS Q Değeri
Q3
Scopus Q Değeri
Q3
Cilt
168
Sayı
6
