Genome characterization of a Turkish bovine rotavirus field isolate by shotgun metagenomics

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dc.contributor.authorAksoy, Emel
dc.contributor.authorAzkur, Ahmet Kuersat
dc.date.accessioned2025-01-21T16:41:19Z
dc.date.available2025-01-21T16:41:19Z
dc.date.issued2023
dc.departmentKırıkkale Üniversitesi
dc.description.abstractA bovine rotavirus (BRV) isolate from Kirsehir was isolated from feces of a neonatal calf with diarrhea, identified, and sequenced by shotgun sequencing. Its genotype constellation is G10-P[5]-I2-R2-C2-M2-A3-N2-T6-E2-H3. The structural genes and the non-structural genes NSP1, NSP3, and NSP4 of the Kirsehir isolate were similar in sequence to those of BRVs identified in Turkey. However, VP2, NSP2, NSP4, and NSP5/6 showed similarity to those of rotaviruses from different animal hosts. These findings not only expand our current understanding of the diversity of rotaviruses but also contribute to our understanding of the evolution of rotaviruses at both the national and global levels and reinforce the significance of conducting further research on rotaviruses in Turkey.
dc.description.sponsorshipScientific Research Projects Coordination Unit of Kirikkale University [2021/111]
dc.description.sponsorshipAcknowledgementThis work was supported by the Scientific Research Projects Coordination Unit of Kirikkale University (project number 2021/111).
dc.identifier.doi10.1007/s00705-023-05778-7
dc.identifier.issn0304-8608
dc.identifier.issn1432-8798
dc.identifier.issue6
dc.identifier.pmid37170023
dc.identifier.scopus2-s2.0-85159164009
dc.identifier.scopusqualityQ3
dc.identifier.urihttps://doi.org/10.1007/s00705-023-05778-7
dc.identifier.urihttps://hdl.handle.net/20.500.12587/24868
dc.identifier.volume168
dc.identifier.wosWOS:000986854500003
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherSpringer Wien
dc.relation.ispartofArchives of Virology
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_20241229
dc.subjectBovine rotavirus; Neonatal calf diarrhea; Virus isolation; Whole genome sequencing; Shotgun sequencing; Evolution
dc.titleGenome characterization of a Turkish bovine rotavirus field isolate by shotgun metagenomics
dc.typeArticle

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